Workshop 1: Single-cell RNA-seq

Learn the basics of analyzing single-cell RNA-sequencing data.

Overview

Lecture

Date: October 28, 2024

Instructor: Dr. Anna Casasent

From Bench to Bioinformatics: single-cell resources and strategies.


Workshop

Date: December 02, 2024

Instructor: Dr. Anna Casasent

Single-cell Integration Workshop.

Download Materials

  • workshop-01.zip: compressed folder containing all workshop content.
    • README.docx document with instruction for installing required libraries
    • data/ folder containing single-cell datasets
    • code/ folder containing workshop R markdown and Rmd knitted html.
    • slides/ folder containing lecture slides

⬇ Download Workshop 1 Materials

Workshop Steps

  1. Download workshop materials above
  2. Once downloaded, upzip contents
  3. Read through lecture slides
  4. Follow instructions in README to set up environment
  5. Open code/sc_integration_tutorial_short_20241201.Rmd and follow along