Workshop 3: Bulk RNA-seq

Learn standard analysis for bulk RNA-sequencing data.

Overview

Lecture

Date: September 18, 2025

Instructor: Dr. Aatish Thennavan

Lecture covering both experimental and computational workflows for bulk RNA-sequencing data.


Workshop

Date: October 16, 2025

Instructor: Dr. Aatish Thennavan

Hands-on bulk RNA-sequencing workshop covering various techniques, applications, and best practices for analyzing bulk RNA-sequencing data.

Download Materials

  • workshop-03.zip: compressed folder containing all workshop content.
    • README.md document detailing required R packages and learning goals.
    • data/ folder containing TCGA data used in the workshop
    • code/ folder containing workshop R markdown.
    • slides/ folder containing all lecture slides (experimental and computational workflows)

⬇ Download Workshop 3 Materials

Workshop Steps

  1. Download workshop materials above
  2. Once downloaded, upzip contents
  3. Read through lecture slides
  4. Follow instructions in README to set up environment
  5. Open code/bulkRNAseqworkshop_2025.Rmd and follow along